Chr1 2674709 C_T LOC_Os01g05610.1 CDS 7 12 58.33 sampl1 310 974 230 231 Chr1 2674718 T_C LOC_Os01g05610.1 CDS 7 15 46.67 sampl1 319 974 239 222 Chr1 2687032 T_C LOC_Os01g05630.1 CDS 3 10 30.00 sampl1 304 972 230 231 Chr1 2857884 G_C LOC_Os01g05970.1 CDS 5 22 22.73 sampl1 251 767 175 286 Chr1 2857946 T_C LOC_Os01g05970.1 CDS 7 32 21.88 sampl1 189 767 113 348 Chr1 2857976 G_C LOC_Os01g05970.1 CDS 5 31 16.13 sampl1 159 767 83 378 Chr1 2857997 G_A LOC_Os01g05970.1 CDS 5 29 17.24 sampl1 138 767 62 399 Chr1 6451672 T_C LOC_Os01g11900.1 CDS 2 13 15.38 sampl1 5066 6474 245 201 Chr1 6451673 C_A LOC_Os01g11900.1 CDS 2 13 15.38 sampl1 5067 6474 246 200 Chr1 8263189 A_G LOC_Os01g14770.1 5'UTR 7 10 70.00 sampl1 351 7136 350 91 Chr1 30189636 T_C LOC_Os01g52540.1 3'UTR 2 16 12.50 sampl1 2900 3176 285 276 Chr1 30189636 A_G LOC_Os01g52550.1 CDS 2 16 12.50 sampl1 3878 4255 276 75 Chr1 30189639 C_T LOC_Os01g52540.1 3'UTR 2 16 12.50 sampl1 2903 3176 288 273 Chr1 30189639 G_A LOC_Os01g52550.1 CDS 2 16 12.50 sampl1 3875 4255 273 78 Chr1 39434578 T_C LOC_Os01g67860.1 CDS 2 14 14.29 sampl1 330 1577 168 880 Chr1 39434579 C_T LOC_Os01g67860.1 CDS 2 14 14.29 sampl1 329 1577 167 881 Chr1 40938346 A_T LOC_Os01g70720.2 3'UTR 6 11 54.55 sampl1 2372 2901 558 529 Chr1 40938411 T_C LOC_Os01g70720.2 3'UTR 5 11 45.45 sampl1 2307 2901 493 594 Chr10 6877883 C_T LOC_Os10g12354.1 3'UTR 4 10 40.00 sampl1 1975 2398 120 423 Chr10 8037876 C_T LOC_Os10g15240.1 CDS 13 26 50.00 sampl1 57 858 56 147 Chr10 14095260 T_C LOC_Os10g26850.1 5'UTR 3 15 20.00 sampl1 150 1317 149 564 Chr10 14095326 T_C LOC_Os10g26850.1 5'UTR 6 20 30.00 sampl1 216 1317 215 498 Chr10 14095617 T_C LOC_Os10g26850.1 5'UTR 6 15 40.00 sampl1 507 1317 506 207 Chr10 14096112 C_A LOC_Os10g26850.1 CDS 14 27 51.85 sampl1 878 1317 89 133 Chr10 14096190 G_C LOC_Os10g26850.1 CDS 29 49 59.18 sampl1 956 1317 167 55 Chr10 14096447 T_C LOC_Os10g26850.1 3'UTR 3 16 18.75 sampl1 1213 1317 201 104 Chr10 15229641 T_C LOC_Os10g29274.1 3'UTR 5 11 45.45 sampl1 3286 3474 124 188 Chr10 16981708 T_A LOC_Os10g32400.1 3'UTR 3 13 23.08 sampl1 724 920 35 196 Chr11 2015061 G_C LOC_Os11g04720.1 CDS 2 15 13.33 sampl1 619 827 191 70 Chr11 13461099 C_T LOC_Os11g23790.1 3'UTR 2 15 13.33 sampl1 1378 1950 17 572 Chr11 13461101 G_T LOC_Os11g23790.1 3'UTR 2 15 13.33 sampl1 1376 1950 15 574 Chr11 14713812 C_A LOC_Os11g25780.1 CDS 2 14 14.29 sampl1 488 1248 96 313 Chr11 23186141 C_T LOC_Os11g38959.1 CDS 20 46 43.48 sampl1 383 1060 289 92 Chr11 25150186 G_A LOC_Os11g41820.1 CDS 3 11 27.27 sampl1 1069 2039 225 395 Chr12 111855 C_T LOC_Os12g01190.2 3'UTR 3 13 23.08 sampl1 3821 4382 29 167 Chr12 111859 C_G LOC_Os12g01190.2 3'UTR 3 13 23.08 sampl1 3825 4382 33 163 Chr12 20043043 C_A LOC_Os12g33120.1 3'UTR 6 38 15.79 sampl1 512 583 188 71 Chr12 20043045 T_A LOC_Os12g33120.1 3'UTR 4 35 11.43 sampl1 514 583 190 69 Chr12 20078201 A_G LOC_Os12g33180.1 3'UTR 6 19 31.58 sampl1 587 1213 133 239 Chr12 20078311 A_G LOC_Os12g33180.1 3'UTR 2 15 13.33 sampl1 697 1213 243 129 Chr2 2108345 G_C LOC_Os02g04680.1 intron 2 11 18.18 sampl1 2517 Chr2 5469812 A_T LOC_Os02g10390.1 intron 2 12 16.67 sampl1 1485 Chr2 5469813 T_A LOC_Os02g10390.1 intron 2 12 16.67 sampl1 1485 Chr2 12414518 T_G LOC_Os02g20980.2 3'UTR 5 12 41.67 sampl1 1219 1407 256 188 Chr2 26161211 C_T LOC_Os02g43350.1 CDS 2 13 15.38 sampl1 2289 3092 193 127 Chr2 29472327 T_C LOC_Os02g48150.1 CDS 2 10 20.00 sampl1 249 1159 130 286 Chr2 30558858 C_T LOC_Os02g50010.1 CDS 2 12 16.67 sampl1 492 1770 184 136 Chr2 35686538 G_C LOC_Os02g58340.1 CDS 2 12 16.67 sampl1 992 3247 102 128 Chr2 35686540 G_T LOC_Os02g58340.1 CDS 2 12 16.67 sampl1 990 3247 100 130 Chr3 4095310 T_C LOC_Os03g08010.1 CDS 20 94 21.28 sampl1 117 1344 116 345 Chr3 4095373 T_C LOC_Os03g08010.1 CDS 16 95 16.84 sampl1 180 1344 179 282 Chr3 4095412 C_T LOC_Os03g08010.1 CDS 29 116 25.00 sampl1 219 1344 218 243 Chr3 4096465 C_T LOC_Os03g08010.1 CDS 16 98 16.33 sampl1 570 1344 107 774 Chr3 4100794 T_C LOC_Os03g08020.1 CDS 8 21 38.10 sampl1 54 1344 53 408 Chr3 4100857 T_C LOC_Os03g08020.1 CDS 18 47 38.30 sampl1 117 1344 116 345 Chr3 4100959 C_T LOC_Os03g08020.1 CDS 11 38 28.95 sampl1 219 1344 218 243 Chr3 4100965 T_C LOC_Os03g08020.1 CDS 7 35 20.00 sampl1 225 1344 224 237 Chr3 4101836 C_T LOC_Os03g08020.1 CDS 3 14 21.43 sampl1 501 1344 38 843 Chr3 4101905 C_T LOC_Os03g08020.1 CDS 16 74 21.62 sampl1 570 1344 107 774 Chr3 4102448 T_C LOC_Os03g08020.1 CDS 29 146 19.86 sampl1 1113 1344 650 231 Chr3 4102451 T_C LOC_Os03g08020.1 CDS 32 149 21.48 sampl1 1116 1344 653 228 Chr3 4111492 T_C LOC_Os03g08050.1 CDS 4 23 17.39 sampl1 84 1344 83 378 Chr3 17675297 A_G LOC_Os03g31026.2 5'UTR 2 11 18.18 sampl1 1065 3599 1064 710 Chr3 17675305 T_G LOC_Os03g31026.2 5'UTR 2 11 18.18 sampl1 1073 3599 1072 702 Chr3 17676979 G_A LOC_Os03g31026.2 CDS 6 24 25.00 sampl1 2636 3599 281 90 Chr3 24226645 G_C LOC_Os03g43440.1 CDS 2 14 14.29 sampl1 1286 1707 1215 128 Chr3 31079372 T_C LOC_Os03g54200.1 CDS 4 22 18.18 sampl1 483 1946 353 1099 Chr3 32715723 T_C LOC_Os03g57349.1 CDS 6 33 18.18 sampl1 587 992 292 70 Chr3 32715803 A_C LOC_Os03g57349.1 CDS 13 38 34.21 sampl1 507 992 212 150 Chr3 32715821 G_C LOC_Os03g57349.1 CDS 14 33 42.42 sampl1 489 992 194 168 Chr3 32716138 A_G LOC_Os03g57349.1 5'UTR 9 39 23.08 sampl1 172 992 171 122 Chr3 32716168 G_C LOC_Os03g57349.1 5'UTR 4 25 16.00 sampl1 142 992 141 152 Chr3 33171431 A_G LOC_Os03g58230.1 CDS 2 15 13.33 sampl1 1378 2052 480 100 Chr3 33171437 A_G LOC_Os03g58230.1 CDS 2 15 13.33 sampl1 1384 2052 486 94 Chr3 35220220 G_A LOC_Os03g62180.2 CDS 3 11 27.27 sampl1 2701 3839 2175 401 Chr4 1128893 A_G LOC_Os04g02890.2 5'UTR 3 10 30.00 sampl1 183 1197 182 142 Chr4 7082842 T_C LOC_Os04g12820.1 CDS 3 12 25.00 sampl1 320 969 316 391 Chr4 9095095 G_T LOC_Os04g16722.1 5'UTR 6 29 20.69 sampl1 1021 4203 1020 1027 Chr4 18042459 G_T LOC_Os04g30240.1 CDS 7 29 24.14 sampl1 2292 2622 1157 26 Chr4 18042501 G_C LOC_Os04g30240.1 CDS 8 31 25.81 sampl1 2250 2622 1115 68 Chr4 18042651 T_A LOC_Os04g30240.1 CDS 6 28 21.43 sampl1 2100 2622 965 218 Chr4 18043450 C_T LOC_Os04g30240.1 CDS 8 22 36.36 sampl1 1301 2622 166 1017 Chr4 19835945 C_T LOC_Os04g32850.1 CDS 2 15 13.33 sampl1 444 1258 274 444 Chr4 32337753 A_G LOC_Os04g54310.1 CDS 2 15 13.33 sampl1 120 645 119 113 Chr5 19057257 G_A LOC_Os05g32570.1 CDS 3 12 25.00 sampl1 1242 2932 195 1358 Chr5 21079736 T_G LOC_Os05g35470.1 CDS 7 19 36.84 sampl1 145 1246 91 43 Chr5 22063143 T_C LOC_Os05g37690.1 CDS 2 14 14.29 sampl1 1914 2636 526 280 Chr5 22063149 A_C LOC_Os05g37690.1 CDS 2 14 14.29 sampl1 1920 2636 532 274 Chr6 3103363 C_T LOC_Os06g06600.1 5'UTR 3 10 30.00 sampl1 444 3536 443 1498 Chr6 12453660 T_C LOC_Os06g21590.1 intron 18 20 90.00 sampl1 1249 Chr6 16224116 G_C LOC_Os06g28524.1 5'UTR 3 13 23.08 sampl1 93 1198 92 200 Chr6 16224162 T_G LOC_Os06g28524.1 5'UTR 5 24 20.83 sampl1 139 1198 138 154 Chr7 1987604 C_T LOC_Os07g04500.1 3'UTR 3 13 23.08 sampl1 532 786 58 254 Chr7 7581584 C_G LOC_Os07g13234.1 3'UTR 16 77 20.78 sampl1 1957 2566 1019 609 Chr7 7581891 G_A LOC_Os07g13234.1 3'UTR 16 77 20.78 sampl1 1650 2566 712 916 Chr7 7581905 C_T LOC_Os07g13234.1 3'UTR 15 77 19.48 sampl1 1636 2566 698 930 Chr7 7582434 A_T LOC_Os07g13234.1 3'UTR 10 19 52.63 sampl1 1107 2566 169 1459 Chr7 7582541 A_G LOC_Os07g13234.1 3'UTR 5 13 38.46 sampl1 1000 2566 62 1566 Chr7 19907228 G_A LOC_Os07g33300.2 CDS 21 42 50.00 sampl1 1190 1719 141 116 Chr7 19907252 A_G LOC_Os07g33300.2 CDS 21 42 50.00 sampl1 1166 1719 117 140 Chr9 4821 T_C LOC_Os09g00999.1 3'UTR 46 114 40.35 sampl1 1948 2585 1122 637 Chr9 6671 A_T LOC_Os09g01000.1 5'UTR 23 52 44.23 sampl1 288 2927 287 1229 Chr9 8975 T_A LOC_Os09g01000.1 3'UTR 26 99 26.26 sampl1 2592 2927 777 335 Chr9 16993397 A_G LOC_Os09g27970.4 3'UTR 3 13 23.08 sampl1 1929 3167 207 330 Chr9 22934223 T_C LOC_Os09g40000.1 CDS 8 18 44.44 sampl1 243 2360 190 367 Chr1 147667 A_G LOC_Os01g01302.1 3'UTR 3 11 27.27 sampl2 970 1155 91 185 Chr1 210740 C_T LOC_Os01g01420.2 CDS 2 10 20.00 sampl2 743 1913 81 150 Chr1 2674709 C_T LOC_Os01g05610.1 CDS 8 19 42.11 sampl2 310 974 230 231 Chr1 2674718 T_C LOC_Os01g05610.1 CDS 9 18 50.00 sampl2 319 974 239 222 Chr1 2674841 C_G LOC_Os01g05610.1 CDS 3 21 14.29 sampl2 442 974 362 99 Chr1 2674847 C_T LOC_Os01g05610.1 CDS 3 19 15.79 sampl2 448 974 368 93 Chr1 2820466 C_T LOC_Os01g05900.1 CDS 8 19 42.11 sampl2 304 734 230 231 Chr1 2857829 C_T LOC_Os01g05970.1 CDS 7 50 14.00 sampl2 306 767 230 231 Chr1 2857946 T_C LOC_Os01g05970.1 CDS 10 39 25.64 sampl2 189 767 113 348 Chr1 7136501 G_T LOC_Os01g12880.1 CDS 2 10 20.00 sampl2 1858 2687 192 526 Chr1 8261369 T_C LOC_Os01g14770.1 5'UTR 9 11 81.82 sampl2 612 7136 169 703 Chr1 8387112 A_G LOC_Os01g14950.1 3'UTR 2 12 16.67 sampl2 2045 2193 270 148 Chr1 8546266 A_G LOC_Os01g15270.1 CDS 8 50 16.00 sampl2 629 898 186 152 Chr1 8546373 A_G LOC_Os01g15270.1 CDS 19 85 22.35 sampl2 522 898 79 259 Chr1 8546606 A_G LOC_Os01g15270.1 5'UTR 23 82 28.05 sampl2 289 898 288 153 Chr1 8546794 A_G LOC_Os01g15270.1 5'UTR 33 79 41.77 sampl2 101 898 100 341 Chr1 12645848 A_G LOC_Os01g22490.1 CDS 13 56 23.21 sampl2 562 895 451 16 Chr1 20602211 G_A LOC_Os01g36950.1 5'UTR 9 55 16.36 sampl2 51 1771 50 19 Chr1 25117330 A_G LOC_Os01g43844.1 CDS 3 10 30.00 sampl2 1108 2060 167 223 Chr1 28130151 A_G LOC_Os01g48990.1 3'UTR 6 33 18.18 sampl2 1417 1543 90 126 Chr1 28175757 A_G LOC_Os01g49026.1 3'UTR 2 13 15.38 sampl2 450 811 12 361 Chr1 29207268 A_G LOC_Os01g50849.3 3'UTR 5 19 26.32 sampl2 1365 2239 111 361 Chr1 32857980 A_G LOC_Os01g56890.1 CDS 2 16 12.50 sampl2 118 1042 21 236 Chr1 35763879 A_G LOC_Os01g61814.1 CDS 5 26 19.23 sampl2 416 939 127 6 Chr1 40708894 A_T LOC_Os01g70300.1 3'UTR 2 12 16.67 sampl2 1801 2055 32 254 Chr1 40708898 A_C LOC_Os01g70300.1 3'UTR 2 12 16.67 sampl2 1797 2055 28 258 Chr1 41481845 T_C LOC_Os01g71599.1 CDS 2 10 20.00 sampl2 150 426 104 165 Chr10 8037876 C_T LOC_Os10g15240.1 CDS 10 27 37.04 sampl2 57 858 56 147 Chr10 10812229 C_T LOC_Os10g21196.1 intron 17 19 89.47 sampl2 189 Chr10 14095260 T_C LOC_Os10g26850.1 5'UTR 2 14 14.29 sampl2 150 1317 149 564 Chr10 14095326 T_C LOC_Os10g26850.1 5'UTR 2 11 18.18 sampl2 216 1317 215 498 Chr10 14095617 T_C LOC_Os10g26850.1 5'UTR 4 18 22.22 sampl2 507 1317 506 207 Chr10 14096112 C_A LOC_Os10g26850.1 CDS 10 18 55.56 sampl2 878 1317 89 133 Chr10 14096190 G_C LOC_Os10g26850.1 CDS 20 34 58.82 sampl2 956 1317 167 55 Chr10 14096700 C_T LOC_Os10g26859.1 CDS 4 19 21.05 sampl2 65 2598 43 139 Chr10 15229641 T_C LOC_Os10g29274.1 3'UTR 7 11 63.64 sampl2 3286 3474 124 188 Chr10 21863308 A_G LOC_Os10g40740.1 3'UTR 3 10 30.00 sampl2 1638 1938 95 300 Chr10 22453270 G_A LOC_Os10g41710.1 CDS 4 10 40.00 sampl2 208 904 64 94 Chr10 22752792 A_G LOC_Os10g42240.1 3'UTR 3 15 20.00 sampl2 1544 1857 62 313 Chr11 1864915 C_T LOC_Os11g04460.1 CDS 4 12 33.33 sampl2 2978 3365 200 105 Chr11 1865028 A_G LOC_Os11g04460.1 3'UTR 4 10 40.00 sampl2 3091 3365 7 274 Chr11 4788515 G_A LOC_Os11g09010.3 CDS 2 10 20.00 sampl2 1513 2307 1084 117 Chr11 4788516 G_T LOC_Os11g09010.3 CDS 2 10 20.00 sampl2 1514 2307 1085 116 Chr11 14713812 C_A LOC_Os11g25780.1 CDS 3 15 20.00 sampl2 488 1248 96 313 Chr11 22661087 A_C LOC_Os11g38260.1 CDS 7 19 36.84 sampl2 536 1330 61 181 Chr11 23186141 C_T LOC_Os11g38959.1 CDS 11 36 30.56 sampl2 383 1060 289 92 Chr11 23187312 A_G LOC_Os11g38959.1 3'UTR 31 57 54.39 sampl2 738 1060 84 322 Chr11 28806625 A_T LOC_Os11g47760.1 CDS 18 72 25.00 sampl2 464 2389 170 1565 Chr12 109231 C_T LOC_Os12g01190.2 CDS 3 10 30.00 sampl2 1609 4382 173 1445 Chr12 110372 G_A LOC_Os12g01190.2 CDS 6 15 40.00 sampl2 2750 4382 1314 304 Chr12 110443 G_C LOC_Os12g01190.2 CDS 4 11 36.36 sampl2 2821 4382 1385 233 Chr12 1302387 A_G LOC_Os12g03350.1 CDS 9 11 81.82 sampl2 796 843 357 47 Chr12 9263897 A_G LOC_Os12g16200.1 3'UTR 3 16 18.75 sampl2 1391 1612 108 221 Chr12 11278202 A_G LOC_Os12g19381.1 3'UTR 30 65 46.15 sampl2 866 1112 246 246 Chr12 20008653 A_G LOC_Os12g33080.1 3'UTR 6 12 50.00 sampl2 1790 2026 74 236 Chr12 25282999 A_G LOC_Os12g40840.3 3'UTR 5 11 45.45 sampl2 1204 1928 81 724 Chr12 26345357 T_C LOC_Os12g42390.1 CDS 3 12 25.00 sampl2 278 387 277 109 Chr2 1754866 A_G LOC_Os02g04040.1 CDS 5 12 41.67 sampl2 1499 1819 185 5 Chr2 3677728 C_T LOC_Os02g07150.1 intron 2 10 20.00 sampl2 2372 Chr2 3677728 G_A LOC_Os02g07160.1 3'UTR 2 10 20.00 sampl2 1470 2002 60 532 Chr2 4696662 A_G LOC_Os02g09150.1 CDS 5 14 35.71 sampl2 538 2656 275 299 Chr2 6058870 A_G LOC_Os02g11740.1 CDS 2 14 14.29 sampl2 1363 2258 126 221 Chr2 6060107 A_G LOC_Os02g11740.1 3'UTR 10 13 76.92 sampl2 2079 2258 104 179 Chr2 6964390 A_G LOC_Os02g13110.2 3'UTR 2 10 20.00 sampl2 1837 2268 85 431 Chr2 13012852 A_G LOC_Os02g21880.1 3'UTR 4 14 28.57 sampl2 1174 1482 45 308 Chr2 15641590 A_G LOC_Os02g26650.3 3'UTR 3 10 30.00 sampl2 1743 2071 187 328 Chr2 18981174 A_G LOC_Os02g32120.1 3'UTR 5 11 45.45 sampl2 947 1283 23 336 Chr2 21040163 A_G LOC_Os02g35060.1 CDS 3 10 30.00 sampl2 1315 1867 331 229 Chr2 22984612 A_G LOC_Os02g38050.1 CDS 8 25 32.00 sampl2 1024 3274 654 613 Chr2 23382535 A_G LOC_Os02g38680.1 CDS 11 14 78.57 sampl2 1817 3306 348 160 Chr2 23913349 A_G LOC_Os02g39630.2 intron 5 18 27.78 sampl2 932 Chr2 24046768 A_G LOC_Os02g39790.2 5'UTR 13 39 33.33 sampl2 562 2240 350 76 Chr2 24046768 A_G LOC_Os02g39795.1 intron 13 39 33.33 sampl2 1665 350 76 Chr2 29457584 A_G LOC_Os02g48110.1 3'UTR 2 12 16.67 sampl2 3045 3329 192 284 Chr2 30260655 T_C LOC_Os02g49510.1 intron 9 11 81.82 sampl2 2138 Chr2 31648837 A_G LOC_Os02g51670.1 5'UTR 6 42 14.29 sampl2 370 2071 369 193 Chr2 35558726 A_G LOC_Os02g58090.1 3'UTR 2 15 13.33 sampl2 1901 2087 93 186 Chr3 1665388 A_G LOC_Os03g03720.1 3'UTR 17 89 19.10 sampl2 1697 1885 173 188 Chr3 2987772 C_T LOC_Os03g05980.1 CDS 4 29 13.79 sampl2 417 1054 289 92 Chr3 4095310 T_C LOC_Os03g08010.1 CDS 13 68 19.12 sampl2 117 1344 116 345 Chr3 4095373 T_C LOC_Os03g08010.1 CDS 11 69 15.94 sampl2 180 1344 179 282 Chr3 4095412 C_T LOC_Os03g08010.1 CDS 24 91 26.37 sampl2 219 1344 218 243 Chr3 4096396 C_T LOC_Os03g08010.1 CDS 4 27 14.81 sampl2 501 1344 38 843 Chr3 4096465 C_T LOC_Os03g08010.1 CDS 14 68 20.59 sampl2 570 1344 107 774 Chr3 4100794 T_C LOC_Os03g08020.1 CDS 8 20 40.00 sampl2 54 1344 53 408 Chr3 4100857 T_C LOC_Os03g08020.1 CDS 17 56 30.36 sampl2 117 1344 116 345 Chr3 4100959 C_T LOC_Os03g08020.1 CDS 12 68 17.65 sampl2 219 1344 218 243 Chr3 4100965 T_C LOC_Os03g08020.1 CDS 12 67 17.91 sampl2 225 1344 224 237 Chr3 4101836 C_T LOC_Os03g08020.1 CDS 4 26 15.38 sampl2 501 1344 38 843 Chr3 4101905 C_T LOC_Os03g08020.1 CDS 23 87 26.44 sampl2 570 1344 107 774 Chr3 4102037 G_A LOC_Os03g08020.1 CDS 12 87 13.79 sampl2 702 1344 239 642 Chr3 4102448 T_C LOC_Os03g08020.1 CDS 20 112 17.86 sampl2 1113 1344 650 231 Chr3 4102451 T_C LOC_Os03g08020.1 CDS 22 116 18.97 sampl2 1116 1344 653 228 Chr3 4112569 T_C LOC_Os03g08050.1 CDS 4 30 13.33 sampl2 552 1344 89 792 Chr3 4112587 C_T LOC_Os03g08050.1 CDS 8 38 21.05 sampl2 570 1344 107 774 Chr3 5100241 A_G LOC_Os03g10090.1 3'UTR 15 46 32.61 sampl2 1905 2355 124 450 Chr3 7914793 C_T LOC_Os03g14590.1 3'UTR 2 12 16.67 sampl2 1433 1729 67 296 Chr3 10330179 A_G LOC_Os03g18420.1 3'UTR 5 10 50.00 sampl2 506 923 14 417 Chr3 10359092 C_G LOC_Os03g18454.1 CDS 4 18 22.22 sampl2 258 2178 103 178 Chr3 12366321 G_T LOC_Os03g21664.2 5'UTR 4 17 23.53 sampl2 556 836 298 48 Chr3 12366511 T_C LOC_Os03g21664.2 5'UTR 4 26 15.38 sampl2 366 836 108 238 Chr3 12532412 A_G LOC_Os03g21900.1 3'UTR 6 19 31.58 sampl2 1350 1636 72 286 Chr3 12532417 A_G LOC_Os03g21900.1 3'UTR 8 19 42.11 sampl2 1355 1636 77 281 Chr3 17675095 T_A LOC_Os03g31026.2 5'UTR 11 28 39.29 sampl2 863 3599 862 912 Chr3 17675297 A_G LOC_Os03g31026.2 5'UTR 4 11 36.36 sampl2 1065 3599 1064 710 Chr3 17675305 T_G LOC_Os03g31026.2 5'UTR 4 11 36.36 sampl2 1073 3599 1072 702 Chr3 17676418 A_G LOC_Os03g31026.2 5'UTR 7 15 46.67 sampl2 2075 3599 299 279 Chr3 17676466 T_C LOC_Os03g31026.2 5'UTR 7 13 53.85 sampl2 2123 3599 347 231 Chr3 17676536 G_A LOC_Os03g31026.2 5'UTR 2 14 14.29 sampl2 2193 3599 417 161 Chr3 17676979 G_A LOC_Os03g31026.2 CDS 5 22 22.73 sampl2 2636 3599 281 90 Chr3 21381936 A_G LOC_Os03g38520.1 3'UTR 10 19 52.63 sampl2 378 675 54 297 Chr3 25042583 A_G LOC_Os03g44500.1 3'UTR 3 10 30.00 sampl2 3475 3743 462 268 Chr3 25130574 A_G LOC_Os03g44620.2 CDS 13 55 23.64 sampl2 1439 1939 318 4 Chr3 25130574 T_C LOC_Os03g44630.1 3'UTR 13 55 23.64 sampl2 1101 1422 596 321 Chr3 28254751 A_G LOC_Os03g49620.3 CDS 3 13 23.08 sampl2 2078 2396 232 82 Chr3 28565584 A_G LOC_Os03g50080.1 3'UTR 3 15 20.00 sampl2 1067 1179 166 112 Chr3 28689054 A_G LOC_Os03g50310.1 3'UTR 3 17 17.65 sampl2 1393 2055 51 662 Chr3 28906675 A_G LOC_Os03g50620.1 3'UTR 2 13 15.38 sampl2 1264 1518 246 254 Chr3 29946412 A_G LOC_Os03g52150.1 3'UTR 5 11 45.45 sampl2 3065 3361 113 296 Chr3 30560942 A_G LOC_Os03g53270.1 3'UTR 6 22 27.27 sampl2 1007 1243 162 236 Chr3 30561013 A_G LOC_Os03g53270.1 3'UTR 6 28 21.43 sampl2 936 1243 91 307 Chr3 31079372 T_C LOC_Os03g54200.1 CDS 8 28 28.57 sampl2 483 1946 353 1099 Chr3 32019381 A_G LOC_Os03g56190.1 3'UTR 2 10 20.00 sampl2 610 777 157 167 Chr3 32715723 T_C LOC_Os03g57349.1 CDS 4 20 20.00 sampl2 587 992 292 70 Chr3 32715803 A_C LOC_Os03g57349.1 CDS 4 15 26.67 sampl2 507 992 212 150 Chr3 32715821 G_C LOC_Os03g57349.1 CDS 5 16 31.25 sampl2 489 992 194 168 Chr3 32716138 A_G LOC_Os03g57349.1 5'UTR 8 37 21.62 sampl2 172 992 171 122 Chr3 32716168 G_C LOC_Os03g57349.1 5'UTR 4 29 13.79 sampl2 142 992 141 152 Chr3 33065990 A_G LOC_Os03g58080.1 CDS 2 13 15.38 sampl2 1652 2265 155 129 Chr3 33998517 C_T LOC_Os03g59700.1 CDS 2 12 16.67 sampl2 167 1126 61 147 Chr3 33998518 G_C LOC_Os03g59700.1 CDS 2 12 16.67 sampl2 166 1126 60 148 Chr4 1098329 A_G LOC_Os04g02820.1 CDS 14 27 51.85 sampl2 2893 3228 2388 52 Chr4 9564158 A_G LOC_Os04g17479.1 5'UTR 2 16 12.50 sampl2 554 2185 553 448 Chr4 9564159 A_G LOC_Os04g17479.1 5'UTR 2 16 12.50 sampl2 553 2185 552 449 Chr4 20046230 A_G LOC_Os04g33110.2 3'UTR 2 12 16.67 sampl2 592 940 44 348 Chr4 20130848 T_C LOC_Os04g33280.1 CDS 4 18 22.22 sampl2 377 2380 72 214 Chr4 21378195 A_G LOC_Os04g35180.2 CDS 3 18 16.67 sampl2 554 1575 249 212 Chr4 22416206 A_G LOC_Os04g37690.1 CDS 9 18 50.00 sampl2 795 1686 327 126 Chr4 23877698 T_C LOC_Os04g40100.1 CDS 2 12 16.67 sampl2 1183 2334 855 362 Chr4 24917855 A_G LOC_Os04g42090.3 CDS 39 102 38.24 sampl2 1810 2741 1196 0 Chr4 24917855 A_G LOC_Os04g42095.1 CDS 39 102 38.24 sampl2 1353 1353 1217 0 Chr4 24917942 A_G LOC_Os04g42090.3 3'UTR 15 86 17.44 sampl2 1897 2741 86 844 Chr4 27551763 A_G LOC_Os04g46450.1 3'UTR 3 13 23.08 sampl2 3164 3569 75 405 Chr4 30688282 A_G LOC_Os04g51792.1 3'UTR 5 12 41.67 sampl2 822 1007 123 185 Chr4 31000333 A_G LOC_Os04g52180.1 CDS 10 28 35.71 sampl2 216 856 106 104 Chr4 31503032 A_G LOC_Os04g52900.1 3'UTR 3 15 20.00 sampl2 5125 5217 237 92 Chr4 31503061 A_G LOC_Os04g52900.1 3'UTR 12 20 60.00 sampl2 5096 5217 208 121 Chr4 34813344 G_T LOC_Os04g58550.1 CDS 2 14 14.29 sampl2 184 1568 66 373 Chr4 34813346 T_C LOC_Os04g58550.1 CDS 2 13 15.38 sampl2 182 1568 64 375 Chr5 2893750 A_G LOC_Os05g05800.1 CDS 2 13 15.38 sampl2 1337 1941 187 549 Chr5 5394638 A_G LOC_Os05g09550.1 3'UTR 2 10 20.00 sampl2 1026 1328 104 302 Chr5 17695468 A_G LOC_Os05g30530.1 CDS 3 11 27.27 sampl2 849 1166 388 43 Chr5 18741494 A_G LOC_Os05g32140.1 CDS 7 37 18.92 sampl2 1824 2290 385 16 Chr5 18793442 A_G LOC_Os05g32220.1 3'UTR 36 66 54.55 sampl2 1259 1591 109 332 Chr5 22062222 A_G LOC_Os05g37690.1 CDS 4 16 25.00 sampl2 1084 2636 171 303 Chr5 23483483 A_G LOC_Os05g39960.1 3'UTR 4 21 19.05 sampl2 554 959 80 405 Chr5 25055603 A_G LOC_Os05g43170.1 CDS 2 15 13.33 sampl2 332 1888 45 147 Chr5 28290161 C_T LOC_Os05g49300.1 CDS 2 14 14.29 sampl2 333 977 243 90 Chr5 29488904 G_C LOC_Os05g51420.1 5'UTR 2 14 14.29 sampl2 734 2312 733 298 Chr6 1809337 G_A LOC_Os06g04270.1 CDS 48 143 33.57 sampl2 2190 2761 830 126 Chr6 3103038 A_G LOC_Os06g06600.1 5'UTR 2 13 15.38 sampl2 119 3536 118 1823 Chr6 3103363 C_T LOC_Os06g06600.1 5'UTR 3 17 17.65 sampl2 444 3536 443 1498 Chr6 3103697 A_G LOC_Os06g06600.1 5'UTR 3 11 27.27 sampl2 778 3536 777 1164 Chr6 3995421 A_G LOC_Os06g08250.1 CDS 3 18 16.67 sampl2 542 970 242 124 Chr6 8759329 A_G LOC_Os06g15420.1 CDS 7 16 43.75 sampl2 1944 2504 225 26 Chr6 20109220 T_G LOC_Os06g34570.1 CDS 10 12 83.33 sampl2 912 1977 466 438 Chr6 24493742 A_G LOC_Os06g41010.1 3'UTR 11 50 22.00 sampl2 849 1345 168 496 Chr6 26414450 A_C LOC_Os06g43860.1 CDS 4 18 22.22 sampl2 386 1584 282 68 Chr6 26689657 A_G LOC_Os06g44230.1 3'UTR 9 16 56.25 sampl2 3347 3746 312 399 Chr6 30570631 C_T LOC_Os06g50490.1 CDS 7 10 70.00 sampl2 529 1949 410 1009 Chr6 30671327 A_T LOC_Os06g50679.1 3'UTR 3 10 30.00 sampl2 4181 4659 930 478 Chr6 30671364 T_A LOC_Os06g50679.1 3'UTR 3 13 23.08 sampl2 4144 4659 893 515 Chr6 31077165 A_G LOC_Os06g51310.2 3'UTR 4 14 28.57 sampl2 3431 3747 88 316 Chr6 31208758 A_G LOC_Os06g51510.1 CDS 7 22 31.82 sampl2 978 1372 401 24 Chr7 4509476 A_G LOC_Os07g08770.1 3'UTR 3 15 20.00 sampl2 770 1094 119 324 Chr7 4775146 A_G LOC_Os07g09150.1 3'UTR 4 12 33.33 sampl2 866 1409 112 543 Chr7 7581378 G_A LOC_Os07g13234.1 3'UTR 6 16 37.50 sampl2 2163 2566 1225 403 Chr7 7581891 G_A LOC_Os07g13234.1 3'UTR 23 45 51.11 sampl2 1650 2566 712 916 Chr7 7581905 C_T LOC_Os07g13234.1 3'UTR 16 33 48.48 sampl2 1636 2566 698 930 Chr7 7582434 A_T LOC_Os07g13234.1 3'UTR 8 15 53.33 sampl2 1107 2566 169 1459 Chr7 8321965 T_C LOC_Os07g14590.1 CDS 2 12 16.67 sampl2 1279 1602 276 107 Chr7 8321966 C_A LOC_Os07g14590.1 CDS 2 12 16.67 sampl2 1278 1602 275 108 Chr7 14368973 T_C LOC_Os07g25150.1 3'UTR 5 12 41.67 sampl2 1530 2329 831 799 Chr7 17136522 T_G LOC_Os07g29240.1 CDS 3 11 27.27 sampl2 390 898 372 144 Chr7 18957996 G_A LOC_Os07g31884.1 CDS 4 17 23.53 sampl2 1047 2330 464 80 Chr7 19907228 G_A LOC_Os07g33300.2 CDS 15 39 38.46 sampl2 1190 1719 141 116 Chr7 19907252 A_G LOC_Os07g33300.2 CDS 15 39 38.46 sampl2 1166 1719 117 140 Chr7 24996160 A_G LOC_Os07g41710.2 3'UTR 4 18 22.22 sampl2 911 1132 87 221 Chr7 29546024 A_G LOC_Os07g49330.1 3'UTR 2 14 14.29 sampl2 2181 2380 64 199 Chr8 2032831 A_G LOC_Os08g04180.1 3'UTR 5 18 27.78 sampl2 1480 1829 9 349 Chr8 13740732 A_G LOC_Os08g22864.1 3'UTR 3 10 30.00 sampl2 3306 3559 36 253 Chr8 19468774 A_G LOC_Os08g31470.1 CDS 5 12 41.67 sampl2 2057 2630 307 102 Chr8 27902734 A_G LOC_Os08g44340.1 CDS 4 18 22.22 sampl2 1375 1764 252 71 Chr9 4821 T_C LOC_Os09g00999.1 3'UTR 25 82 30.49 sampl2 1948 2585 1122 637 Chr9 6671 A_T LOC_Os09g01000.1 5'UTR 15 37 40.54 sampl2 288 2927 287 1229 Chr9 8975 T_G LOC_Os09g01000.1 3'UTR 14 54 25.93 sampl2 2592 2927 777 335 Chr9 2552493 A_G LOC_Os09g04790.1 CDS 6 41 14.63 sampl2 1238 1600 311 0 Chr9 3862666 A_G LOC_Os09g07660.2 3'UTR 4 16 25.00 sampl2 2387 2689 92 302 Chr9 3862756 A_G LOC_Os09g07660.2 3'UTR 3 15 20.00 sampl2 2477 2689 182 212 Chr9 8152152 A_G LOC_Os09g13870.3 intron 2 10 20.00 sampl2 1277 Chr9 8152269 A_G LOC_Os09g13870.3 CDS 2 15 13.33 sampl2 1066 1277 148 21 Chr9 11818766 A_G LOC_Os09g19750.1 intron 2 15 13.33 sampl2 673 Chr9 12217736 A_G LOC_Os09g20350.1 CDS 10 61 16.39 sampl2 1305 1915 772 103 Chr9 13996304 A_G LOC_Os09g23550.1 CDS 6 39 15.38 sampl2 1312 1764 950 61 Chr9 14611133 A_G LOC_Os09g24540.1 3'UTR 2 10 20.00 sampl2 584 1018 25 434 Chr9 17567907 A_G LOC_Os09g28910.1 3'UTR 5 27 18.52 sampl2 1666 1941 365 275 Chr9 18243341 A_G LOC_Os09g29980.1 3'UTR 5 13 38.46 sampl2 1977 2369 94 392 Chr9 18686441 A_G LOC_Os09g31080.1 3'UTR 6 18 33.33 sampl2 617 1116 35 499 Chr9 18686455 A_G LOC_Os09g31080.1 3'UTR 5 21 23.81 sampl2 631 1116 49 485 Chr9 18686503 A_G LOC_Os09g31080.1 3'UTR 4 19 21.05 sampl2 679 1116 97 437 Chr9 18752723 T_C LOC_Os09g31170.1 3'UTR 5 22 22.73 sampl2 1172 1239 596 67 Chr9 18752723 A_G LOC_Os09g31180.1 CDS 5 22 22.73 sampl2 662 1490 61 25 Chr9 21495146 T_A LOC_Os09g37230.1 3'UTR 2 11 18.18 sampl2 2181 2443 219 262 Chr9 22505301 A_G LOC_Os09g39180.1 3'UTR 32 71 45.07 sampl2 1083 1381 58 298 Chr9 22769837 A_G LOC_Os09g39680.1 CDS 2 13 15.38 sampl2 1414 2608 103 106 Chr9 22934223 T_C LOC_Os09g40000.1 CDS 9 28 32.14 sampl2 243 2360 190 367